JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNT11_chr11_76181325_76211502	0/0	c0004	1065	2	2	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0005	1065	2	0	0	2	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0007	1065	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0008	1065	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT16_chr7_121324000_121346104	1/1	c0001	1098	224	9	41	148	6	18	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0002	1098	164	71	31	36	7	19	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0003	1098	5	2	3	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0004	1098	4	3	1	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0005	1098	3	0	2	0	0	1	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0006	1098	3	3	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0007	1098	2	2	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0008	1098	2	0	0	2	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0009	1098	1	0	0	0	1	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT1_chr12_48973322_48987620	1/1	c0001	1113	390	89	73	169	15	42	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	c0002	1113	2	2	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	c0003	1113	1	0	1	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	c0004	1113	1	0	0	0	1	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	c0005	1113	1	0	0	1	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	c0006	1113	1	1	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT2B_chr1_112503965_112535165	0/0	c0001	1176	207	34	34	116	9	14	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	1/1	c0002	1176	181	48	38	67	7	19	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	c0003	1176	11	11	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	c0004	1176	2	0	0	2	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	c0005	1176	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	c0007	1176	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2_chr7_117270451_117328058	1/1	c0001	1083	307	74	56	126	11	38	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0002	1083	3	2	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0003	1083	2	2	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0004	1083	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0006	1083	1	0	0	0	1	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	c0007	1083	1	0	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT3A_chr1_228001998_228066271	1/1	c0001	1059	373	82	62	169	14	44	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	c0002	1059	5	5	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	c0003	1059	1	0	1	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	c0004	1059	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	c0005	1059	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	c0006	1059	1	0	1	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3_chr17_46757506_46823692	0/1	c0001	1068	275	77	68	86	16	27	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	c0002	1068	2	2	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	c0003	1068	1	0	0	0	0	1	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	c0004	1068	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	c0005	1068	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	c0006	1068	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT4_chr1_22112313_22148097	1/1	c0001	1056	358	66	69	166	12	43	copy fasta	WNT4	chr1	22112313	22148097