JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WRNIP1_chr6_2760393_2791952	0/0	c0011	1998	5	0	2	0	0	3	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0012	1998	2	2	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0013	1998	2	2	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0014	1998	1	0	0	0	0	1	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0016	1998	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0017	1998	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0018	1998	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0019	1998	1	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0020	1998	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0021	1998	1	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0022	1998	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0023	1998	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0024	1998	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRN_chr8_31028810_31181138	0/0	c0001	4299	67	8	13	40	1	5	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0002	4299	44	6	4	21	3	10	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/1	c0003	4299	37	6	8	10	4	8	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0004	4299	21	12	1	4	2	2	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0005	4299	13	12	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0006	4299	11	0	7	0	0	4	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0007	4299	7	7	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0008	4299	7	0	1	2	2	2	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0009	4299	6	6	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0010	4299	6	6	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0011	4299	6	3	1	0	2	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0012	4299	3	3	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	1/0	c0013	4299	3	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0014	4299	3	0	2	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0015	4299	3	1	1	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0016	4299	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0017	4299	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0018	4299	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0019	4299	2	1	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0020	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0021	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0022	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0023	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0024	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0025	4299	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0026	4299	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0027	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0028	4299	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0029	4299	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0030	4299	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0031	4299	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0032	4299	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0033	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0034	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0035	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0036	4299	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138