JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WRN_chr8_31028810_31181138	0/0	c0037	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	c0038	4299	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WSB1_chr17_27289114_27320926	1/0	c0001	1266	179	34	45	80	6	13	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/1	c0002	1266	148	55	27	41	6	18	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0003	1266	3	0	0	1	0	2	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0004	1266	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0005	1266	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0006	1266	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0007	1266	1	0	0	0	0	1	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	c0009	1266	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB2_chr12_118027687_118066179	1/1	c0001	1215	215	55	48	79	11	20	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0002	1215	170	27	21	94	4	24	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0003	1215	6	0	0	6	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0004	1215	6	6	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0005	1215	6	6	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0006	1215	3	3	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0007	1215	1	0	0	0	1	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0008	1215	1	0	1	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0009	1215	1	0	0	1	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	c0010	1215	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSCD1_chr17_6065379_6129427	0/1	c0001	1728	232	9	36	148	10	28	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0002	1728	131	55	31	28	5	12	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	1/0	c0003	1728	18	12	2	2	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0004	1728	16	5	2	8	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0005	1728	6	6	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0006	1728	5	1	2	0	0	2	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0007	1728	3	3	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0008	1728	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0009	1728	2	0	1	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0010	1728	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0012	1728	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0013	1728	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0014	1728	1	0	0	0	1	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0015	1728	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0016	1728	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0017	1728	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0018	1728	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0019	1728	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0020	1728	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0021	1728	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0022	1728	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	c0023	1728	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD2_chr12_108124288_108255537	1/0	c0001	1698	220	78	48	55	13	25	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/1	c0002	1698	46	2	11	24	1	7	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0003	1698	7	6	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0004	1698	4	4	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0005	1698	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0006	1698	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537