JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPY2_chrY_22979263_23010465	0/0	c0002	320	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	c0003	320	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	c0004	323	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BRAF_chr7_140714337_140929929	0/0	c0001	2424	98	57	8	17	1	15	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	1/1	c0002	2424	84	20	22	24	3	13	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	c0003	2424	3	0	0	3	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	c0004	2424	2	2	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	c0005	2424	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	c0006	2424	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	c0007	2424	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140725665_140929929	0/0	c0001	2301	101	59	9	17	1	15	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	1/1	c0002	2301	87	20	23	26	3	13	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	c0003	2301	3	0	0	3	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	c0004	2301	2	2	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	c0005	2301	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	c0006	2301	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	c0007	2301	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAP_chr12_111637146_111690956	1/1	c0001	1779	325	81	60	132	8	42	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0002	1779	27	0	0	27	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0003	1779	6	6	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0004	1779	2	1	1	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0005	1779	1	0	1	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0006	1779	1	1	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0007	1779	1	0	0	1	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	c0008	1779	1	1	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAT1_chr7_2532810_2560524	1/0	c0001	2466	139	16	31	63	9	19	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0002	2466	83	42	12	27	1	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0003	2466	61	2	7	48	0	4	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0004	2466	56	0	6	42	0	8	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/1	c0005	2466	25	0	18	1	3	2	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0006	2466	6	5	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0007	2466	6	6	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0008	2466	6	0	0	6	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0009	2466	5	5	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0010	2466	4	1	0	1	0	2	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0011	2466	3	3	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0012	2466	2	2	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0013	2466	2	2	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0014	2466	2	0	0	2	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0015	2466	2	2	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0016	2466	2	2	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0017	2466	2	2	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0018	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0019	2466	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0020	2466	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0021	2466	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0022	2466	1	0	0	0	1	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0023	2466	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0024	2466	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0025	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524