JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB40_chr1_22446851_22536154	0/0	c0007	3720	3	3	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0008	3720	3	0	0	3	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0009	3720	2	0	1	0	0	1	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0010	3720	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0011	3720	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	1/0	c0012	3720	1	0	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0013	3720	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0014	3720	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0015	3720	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0016	3720	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0017	3720	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB41_chr1_197148682_197206293	1/1	c0001	2730	202	62	36	70	8	24	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0002	2730	96	3	20	62	2	9	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0003	2730	24	18	0	6	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0004	2730	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0005	2730	1	0	0	0	0	1	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0006	2730	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0007	2730	1	0	0	1	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	c0008	2730	1	0	0	1	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB42_chr14_104796101_104809712	1/0	c0001	1269	68	8	8	44	0	7	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0002	1269	20	2	3	15	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0003	1269	4	3	0	0	0	1	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0004	1269	2	0	0	2	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0005	1269	2	1	1	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0006	1269	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0007	1269	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	c0008	1269	1	0	0	1	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB43_chr9_126800040_126843210	0/1	c0001	1404	257	67	53	91	13	32	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0002	1404	70	0	0	64	0	6	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	1/0	c0003	1404	43	9	19	5	4	5	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0004	1404	13	13	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0005	1404	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0006	1404	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0008	1404	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	c0009	1404	1	0	0	0	1	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB44_chr11_130221677_130319917	1/0	c0001	1713	259	62	44	133	3	16	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0002	1713	12	10	2	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0003	1713	11	8	2	0	1	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0004	1713	4	3	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/1	c0005	1713	1	0	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0006	1713	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0007	1713	1	0	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	c0008	1713	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB45_chr19_58508530_58524810	1/1	c0001	1536	328	53	62	166	15	30	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0002	1536	43	16	10	8	1	8	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0003	1536	13	12	1	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0004	1536	6	1	3	0	2	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0005	1536	5	5	0	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0006	1536	2	0	0	2	0	0	copy fasta	ZBTB45	chr19	58508530	58524810