JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZCWPW1_chr7_100395872_100433703	0/0	c0006	1950	3	3	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0007	1950	2	0	0	2	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0008	1950	2	0	1	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0009	1950	2	0	0	0	0	2	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0010	1950	1	0	1	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0011	1950	1	0	0	1	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0012	1950	1	0	1	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0013	1950	1	1	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0014	1950	1	0	0	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW2_chr3_28343721_28531358	1/0	c0001	1071	142	41	30	50	4	16	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/1	c0002	1071	59	18	12	20	2	6	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	c0003	1071	51	3	17	24	3	4	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	c0004	1071	2	0	1	0	1	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZDBF2_chr2_206269663_206319427	1/1	c0001	7065	132	36	16	56	6	16	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0002	7065	96	9	28	37	7	15	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0003	7065	42	0	9	30	2	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0004	7065	7	0	4	3	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0005	7065	7	0	0	7	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0006	7065	6	6	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0007	7065	6	0	0	5	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0008	7065	5	5	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0009	7065	5	5	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0010	7065	4	0	1	0	0	3	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0011	7065	3	3	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0012	7065	3	3	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0013	7065	3	2	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0014	7065	2	0	1	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0015	7065	2	2	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0016	7065	2	0	2	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0017	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0018	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0019	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0020	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0021	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0022	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0023	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0024	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0025	7065	1	0	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0026	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0027	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0028	7065	1	0	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0029	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0030	7065	1	0	0	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0031	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0032	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0033	7065	1	0	0	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0034	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0035	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0036	7065	1	0	0	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0037	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427