JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDBF2_chr2_206269663_206319427	0/0	c0038	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0039	7065	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0040	7065	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	c0041	7065	1	0	0	0	1	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDHHC11B_chr5_705355_789729	0/0	c0001	1116	49	1	14	27	2	5	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0002	1116	32	6	8	15	0	3	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0003	1116	30	2	10	15	1	2	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0004	1116	19	10	5	2	2	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0005	1116	14	2	1	9	0	2	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0006	1116	12	0	6	0	3	3	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0007	1116	9	0	0	8	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0008	1116	7	7	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0009	1116	6	6	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0010	1116	6	6	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0011	1116	5	0	0	5	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0012	1116	5	4	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0013	1116	4	0	3	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0014	1116	4	1	1	0	1	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0015	1116	3	0	0	0	0	3	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0016	1116	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	1/0	c0017	1116	3	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0018	1116	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0019	1116	3	0	0	3	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0020	1116	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0021	1116	2	1	0	0	1	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0022	1116	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0023	1116	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0024	1116	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0025	1116	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0026	1116	2	0	2	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0027	1116	2	0	1	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0028	1116	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0029	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0030	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0031	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0032	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0033	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0034	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0035	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0036	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0037	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0038	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0039	1116	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0040	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0041	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0042	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0043	1116	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0044	1116	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0045	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0046	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729