JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF257_chr19_22047484_22096480	0/0	c0004	1692	5	0	3	0	2	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0005	1692	3	3	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0006	1692	3	1	2	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0007	1692	1	0	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0008	1692	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0009	1692	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0010	1692	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0011	1692	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0012	1692	1	0	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0013	1692	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF25_chr10_37944573_37981647	1/1	c0001	1371	386	93	68	171	12	40	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	c0002	1371	8	1	5	0	2	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	c0003	1371	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	c0004	1371	1	0	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	c0005	1371	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	c0006	1371	1	0	0	1	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF260_chr19_36505687_36533271	1/1	c0001	1239	220	40	40	105	9	24	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0002	1239	111	43	21	31	2	14	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0003	1239	20	0	0	18	1	1	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0004	1239	17	1	11	0	2	3	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0005	1239	3	3	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0006	1239	2	2	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF263_chr16_3278491_3296460	1/1	c0001	2052	278	39	51	144	11	31	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0002	2052	79	48	18	7	3	3	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0003	2052	4	4	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0004	2052	3	2	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0005	2052	2	2	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0006	2052	2	0	0	2	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0007	2052	2	0	0	2	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0008	2052	1	0	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0009	2052	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0010	2052	1	0	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0011	2052	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0013	2052	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0014	2052	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF264_chr19_57186500_57227846	0/1	c0001	1884	187	54	39	63	9	21	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	1/0	c0002	1884	128	11	30	65	4	17	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0003	1884	13	13	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0004	1884	10	9	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0005	1884	3	3	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0006	1884	2	0	0	0	0	2	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0007	1884	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0008	1884	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0009	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0010	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846