Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF552_chr19_57802082_57819913	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0007	1224	1	0	0	1	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0009	1224	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0010	1224	1	0	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF554_chr19_2814868_2841735	0/0	c0001	1617	84	16	23	32	3	10	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0002	1617	74	2	20	45	2	5	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	1/0	c0003	1617	59	16	12	24	3	3	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0004	1617	49	9	3	28	1	8	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0005	1617	48	1	5	37	1	4	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0006	1617	42	14	3	14	3	8	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0007	1617	9	6	2	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0008	1617	8	6	0	0	1	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/1	c0009	1617	8	0	4	0	2	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0010	1617	6	6	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0011	1617	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0012	1617	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0013	1617	2	0	0	0	0	2	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0015	1617	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0016	1617	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0017	1617	1	0	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0019	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0020	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0021	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0022	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0023	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0024	1617	1	0	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0025	1617	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0026	1617	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0027	1617	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0028	1617	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0029	1617	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	c0030	1617	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF555_chr19_2836475_2865471	0/0	c0001	1887	276	43	52	142	7	32	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	1/0	c0002	1887	40	25	10	0	3	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/1	c0003	1887	19	4	5	0	4	5	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0004	1887	9	9	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0005	1887	2	1	0	0	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0006	1887	2	0	0	1	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0007	1887	2	2	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0008	1887	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0010	1887	1	0	1	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0012	1887	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	c0013	1887	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF556_chr19_2862335_2888445	1/1	c0001	1371	382	52	76	191	16	45	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0002	1371	30	26	3	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445