Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF556_chr19_2862335_2888445	0/0	c0003	1371	6	4	1	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0004	1371	6	6	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0005	1371	3	3	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0006	1371	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0007	1371	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0008	1371	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0009	1371	2	0	2	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0010	1371	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0011	1371	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0012	1371	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0013	1371	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0014	1371	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0016	1371	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0017	1371	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0018	1371	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0019	1371	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	c0020	1371	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF557_chr19_7064703_7092968	1/0	c0001	1293	228	50	48	87	14	28	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0002	1293	150	34	30	65	4	17	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0003	1293	29	0	2	24	0	3	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0004	1293	8	0	0	8	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0005	1293	7	6	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0006	1290	3	0	0	3	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/1	c0007	1293	1	0	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0008	1293	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0009	1209	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0010	1293	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0011	1293	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0012	1293	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	c0013	1293	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF558_chr19_8801170_8837304	1/1	c0001	1209	418	92	68	199	14	43	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0002	1209	3	3	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0003	1209	2	0	0	1	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0004	1209	2	2	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0005	1209	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	c0007	1209	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF559_chr19_9319179_9350871	1/1	c0001	1617	321	76	64	138	11	30	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0002	1617	27	4	6	10	3	4	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0003	1617	14	10	1	2	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0004	1617	6	0	0	6	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0005	1617	5	0	0	5	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0006	1617	4	4	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0007	1617	3	3	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0008	1617	3	0	0	3	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0009	1617	3	0	0	3	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0012	1617	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871