Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF695_chr1_246980323_247013057	0/0	c0023	1548	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0024	1548	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0025	1548	1	0	0	1	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0026	1548	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF696_chr8_143286417_143304952	0/1	c0001	1125	241	25	50	130	8	27	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0002	1125	137	56	22	38	6	15	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	1/0	c0003	1125	38	4	7	21	1	4	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0004	1125	5	5	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0005	1125	3	3	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0006	1125	2	2	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0007	1125	1	0	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0008	1125	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0009	1125	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0010	1125	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0012	1125	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0013	1151	1	0	0	0	1	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	c0014	1125	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF697_chr1_119614377_119653266	0/0	c0001	1638	224	58	45	90	4	27	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	1/1	c0002	1638	100	9	20	47	8	14	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0003	1639	17	6	2	6	1	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0004	1638	8	0	4	0	1	3	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0005	1639	7	1	1	5	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0006	1638	6	0	0	6	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0007	1638	6	6	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0008	1638	5	0	0	4	1	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0009	1638	4	4	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0010	1638	4	2	1	0	1	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0011	1639	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0012	1638	2	0	0	0	2	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0013	1638	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0014	1639	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0015	1638	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0016	1638	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0017	1665	1	0	1	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0018	1638	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0019	1655	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0020	1638	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	c0021	1638	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF699_chr19_9286140_9314838	1/1	c0001	1929	325	52	56	167	18	30	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0002	1929	39	22	7	2	0	8	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0003	1929	16	13	1	2	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0004	1929	4	4	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0005	1929	3	3	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0006	1929	2	2	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0007	1929	2	2	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0008	1929	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0009	1929	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	c0010	1929	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF69_chr19_11882782_11911696	1/1	c0001	1701	324	52	61	166	12	31	copy fasta	ZNF69	chr19	11882782	11911696