Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF792_chr19_34951354_34969229	0/0	c0009	1899	4	0	4	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0010	1899	4	4	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0011	1899	3	0	0	3	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0012	1899	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0013	1899	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0014	1899	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0015	1899	1	1	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0016	1899	1	0	0	1	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0017	1899	1	0	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0018	1899	1	0	0	1	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0019	1899	1	0	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF793_chr19_37501939_37548333	1/1	c0001	1221	339	70	58	165	11	33	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0002	1221	34	10	8	15	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0003	1221	5	5	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0004	1221	4	0	3	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0005	1221	2	2	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0006	1221	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0009	1221	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0010	1221	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	c0011	1221	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF799_chr19_12385016_12406271	0/1	c0001	1932	252	75	48	99	10	19	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	1/0	c0002	1932	127	1	17	85	2	21	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0003	1932	25	0	6	10	1	8	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0004	1932	14	13	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0005	1932	8	8	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0006	1932	3	0	3	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0007	1932	2	0	0	2	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0008	1932	2	0	0	0	0	2	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0009	1932	2	0	0	2	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0010	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0011	1833	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0012	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0013	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0014	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0015	1932	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0016	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0017	1932	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0018	1932	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0019	1932	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	c0020	1932	1	0	0	0	1	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF79_chr9_127419382_127450372	1/0	c0001	1497	172	32	25	86	9	19	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/1	c0002	1497	81	14	18	32	3	13	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0003	1497	65	1	17	38	3	6	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0004	1497	33	22	0	11	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0005	1497	9	9	0	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0006	1497	2	2	0	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0007	1497	2	0	0	0	0	2	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0008	1497	2	2	0	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372