Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF804B_chr7_88754700_89343528	0/0	c0032	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0033	4050	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0034	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0035	4050	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0036	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0037	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF805_chr19_57235632_57267728	1/0	c0001	1884	245	56	37	117	8	26	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/1	c0002	1884	124	24	37	37	8	17	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0003	1884	12	11	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0004	1884	4	0	0	4	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0005	1884	3	0	3	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0006	1884	2	0	1	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0007	1884	2	2	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0008	1884	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0009	1884	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0010	1884	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0011	1884	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0012	1884	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0013	1884	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0014	1884	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	c0015	1884	1	0	0	0	0	1	copy fasta	ZNF805	chr19	57235632	57267728
ZNF808_chr19_52522668_52561336	1/1	c0001	2712	227	56	35	92	12	30	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0002	2712	60	17	17	9	3	14	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0003	2712	56	0	10	46	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0004	2712	28	0	0	28	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0005	2712	14	8	5	0	1	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0006	2712	5	0	0	5	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0007	2712	4	0	0	4	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0008	2712	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0009	2712	3	3	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0010	2712	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0011	2712	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0012	2712	2	0	2	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0013	2712	2	0	2	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0014	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0015	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0016	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0017	2712	1	0	0	0	0	1	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0018	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0019	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0020	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0021	2712	1	0	0	0	0	1	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0022	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0023	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0024	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0025	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0026	2712	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	c0027	2712	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF80_chr3_114229631_114242578	1/0	c0001	822	146	17	25	82	8	13	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/1	c0002	822	135	23	22	74	4	11	copy fasta	ZNF80	chr3	114229631	114242578