Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACKR2_chr3_42804445_42872286	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR3_chr2_236564825_236587354	1/1	c0001	1089	279	22	49	164	12	30	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0002	1089	88	69	12	0	1	6	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0003	1089	9	0	4	2	0	3	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0004	1089	5	5	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0005	1089	2	2	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0006	1089	2	0	0	0	0	2	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0007	1089	2	2	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0008	1089	1	0	0	0	1	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0009	1089	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0010	1089	1	0	0	0	0	1	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0011	1089	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0012	1089	1	0	1	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0013	1089	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	c0014	1068	1	0	0	1	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR4_chr3_132592270_132607644	1/1	c0001	1053	333	81	56	151	13	30	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0002	1053	10	7	3	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0003	1053	9	1	3	5	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0004	1053	3	3	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0005	1053	1	0	0	1	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0006	1053	1	0	0	1	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	c0007	1053	1	0	0	0	1	0	copy fasta	ACKR4	chr3	132592270	132607644
ACLY_chr17_41861918_41923951	0/1	c0001	3306	222	52	60	77	8	24	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0002	3306	39	9	6	18	1	5	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	1/0	c0003	3306	22	15	4	0	1	1	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0004	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0005	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0006	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0007	3306	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0008	3306	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0009	3306	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0010	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0011	3306	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0012	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	c0014	3306	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACMSD_chr2_134833616_134907034	1/1	c0001	1011	365	72	66	178	10	37	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0002	1011	4	4	0	0	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0003	1011	3	0	0	3	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0004	1011	3	3	0	0	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0005	1011	2	0	0	2	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0007	1011	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0008	1011	1	1	0	0	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0009	1011	1	0	0	0	0	1	copy fasta	ACMSD	chr2	134833616	134907034
ACMSD_chr2_134833616_134907034	0/0	c0010	1011	1	0	0	1	0	0	copy fasta	ACMSD	chr2	134833616	134907034
ACO1_chr9_32379643_32459769	1/0	c0001	2670	178	35	37	63	11	31	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/1	c0002	2670	144	18	24	82	5	14	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	c0003	2670	8	0	0	8	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	c0004	2670	8	6	2	0	0	0	copy fasta	ACO1	chr9	32379643	32459769