JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBLIF_chr11_59824273_59850499	0/0	c0002	1254	40	27	4	8	0	1	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	c0003	1254	22	0	7	14	0	1	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	c0004	1254	20	0	1	14	1	4	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	c0005	1254	15	14	1	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	c0006	1254	4	3	1	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLL1_chr7_107739142_107766667	1/1	c0001	1476	425	94	76	199	16	38	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	c0002	1476	4	4	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	c0003	1476	1	0	0	0	0	1	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	c0004	1476	1	0	0	0	0	1	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	c0005	1476	1	0	0	1	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL2_chrX_22267913_22279461	1/1	c0001	1278	176	20	36	85	12	21	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0002	1278	123	22	20	75	1	5	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0003	1278	32	28	4	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0004	1278	4	4	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0005	1278	2	2	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0006	1283	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0007	1278	1	0	1	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0008	1278	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0009	1279	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0010	1278	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0011	1275	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0012	1278	1	0	1	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0013	1276	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	c0014	1278	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLN1_chr16_49272917_49286838	1/1	c0001	582	358	76	66	152	18	44	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	c0002	582	36	12	4	18	0	2	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	c0003	582	2	0	0	2	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN2_chr18_72531681_72549342	0/0	c0001	675	192	16	62	84	8	22	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	1/1	c0002	675	119	68	7	32	1	9	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0003	675	87	0	0	84	1	2	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0004	675	5	5	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0005	675	5	0	0	5	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0006	675	2	2	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0007	675	2	0	0	2	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0008	675	2	1	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0009	675	1	0	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	c0010	675	1	0	0	0	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN3_chr14_24421545_24434668	1/1	c0001	618	425	66	75	217	17	48	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	c0002	618	25	24	1	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	c0003	618	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	c0004	618	1	0	0	0	1	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN4_chr20_55992357_56010519	1/1	c0001	606	420	99	66	199	16	38	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	c0002	606	3	0	0	3	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	c0003	606	2	0	0	2	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	c0004	606	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBL_chr11_119201339_119313149	1/1	c0001	2721	333	81	54	151	11	34	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0002	2721	12	10	2	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0003	2721	7	0	0	7	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0004	2721	3	2	0	0	0	1	copy fasta	CBL	chr11	119201339	119313149