JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBL_chr11_119201339_119313149	0/0	c0005	2721	2	2	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0006	2721	1	0	0	0	0	1	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0007	2721	1	1	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0008	2721	1	1	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0009	2721	1	0	0	0	1	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0010	2721	1	1	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0011	2721	1	0	0	1	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	c0012	2721	1	0	0	1	0	0	copy fasta	CBL	chr11	119201339	119313149
CBR1_chr21_36065024_36078164	1/1	c0001	834	325	82	61	133	16	31	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0002	834	79	1	9	59	0	10	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0003	834	12	7	2	0	0	3	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0004	834	5	1	4	0	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0005	834	3	0	0	3	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0006	834	2	2	0	0	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0007	834	2	0	0	1	0	1	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0008	834	1	0	0	0	0	1	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	c0009	834	1	1	0	0	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR3_chr21_36130079_36151562	0/1	c0001	834	148	4	29	92	8	14	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0002	834	138	30	17	68	5	18	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	1/0	c0003	834	65	11	14	31	1	7	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0004	834	30	20	9	1	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0005	834	17	12	4	0	1	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0006	834	13	13	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0007	834	6	4	2	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0008	834	3	0	1	0	1	1	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0009	834	1	1	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0010	834	1	0	0	0	0	1	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0011	834	1	0	0	0	0	1	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	c0012	834	1	1	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR4_chr4_168982590_169015255	0/0	c0001	714	187	32	38	83	11	23	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	1/1	c0002	714	97	52	22	7	5	9	copy fasta	CBR4	chr4	168982590	169015255
CBS_chr21_43048191_43080835	0/0	c0001	1656	137	32	24	64	1	16	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0002	1656	89	0	17	54	4	14	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0003	1724	39	28	8	0	2	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0004	1656	11	3	6	0	0	2	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0005	1656	5	5	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0006	1656	3	2	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0007	1656	3	0	0	3	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0008	1656	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0009	1656	1	1	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0010	1724	1	1	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0011	1656	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0012	1656	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0013	1656	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0014	1656	1	0	0	0	1	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0015	1724	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0016	1656	1	0	1	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0017	1656	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	c0018	1656	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBX1_chr17_48065059_48106478	1/1	c0001	558	396	90	68	178	18	40	copy fasta	CBX1	chr17	48065059	48106478