JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC122_chr13_43831352_43884740	1/1	c0001	822	353	73	60	175	8	35	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0002	822	38	15	4	16	2	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0003	822	30	1	2	20	0	7	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0004	822	11	0	0	11	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0005	822	7	0	2	0	2	3	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0006	822	1	1	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0007	822	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	c0008	822	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC124_chr19_17928015_17948985	1/0	c0001	672	266	28	60	143	7	27	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/1	c0002	672	126	61	22	18	6	18	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0003	672	9	0	0	9	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0004	672	6	6	0	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0005	672	5	4	1	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0006	672	2	0	0	2	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0007	672	2	0	0	2	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0008	672	2	0	0	0	1	1	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0009	672	1	1	0	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	c0010	672	1	0	1	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC125_chr5_69275175_69337801	0/1	c0001	1536	262	78	50	103	5	25	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	c0002	1536	74	8	17	37	3	9	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	c0003	1536	2	0	2	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	c0004	1536	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	c0005	1536	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	c0006	1536	1	0	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC126_chr7_23592382_23649708	1/1	c0001	423	376	91	74	155	12	42	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	c0002	423	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	c0003	423	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	c0004	423	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	c0005	444	1	0	0	1	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC127_chr5_191868_223153	1/1	c0001	783	326	32	64	176	11	41	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0002	783	44	17	14	10	1	2	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0003	783	24	22	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0004	783	7	7	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0005	783	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0006	783	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0007	783	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0008	783	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	c0009	783	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC12_chr3_46916730_46981745	0/1	c0001	501	326	65	69	144	10	37	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	1/0	c0002	501	21	20	0	0	0	0	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	0/0	c0003	501	4	1	3	0	0	0	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	0/0	c0004	501	2	2	0	0	0	0	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	0/0	c0005	501	1	0	0	0	0	1	copy fasta	CCDC12	chr3	46916730	46981745
CCDC134_chr22_41795679_41837164	1/1	c0001	690	369	82	64	165	14	42	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	c0002	690	6	6	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	c0003	690	2	0	2	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	c0004	690	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	c0005	690	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	c0006	690	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC136_chr7_128786968_128827130	0/0	c0001	3465	179	44	20	99	1	15	copy fasta	CCDC136	chr7	128786968	128827130