JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC69_chr5_151176052_151229092	0/0	c0007	891	5	5	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0008	891	4	2	2	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0009	891	3	0	0	3	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0010	891	2	2	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0011	891	2	1	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0012	891	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0013	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0014	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0015	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0016	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0017	891	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0018	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0019	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0020	891	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	c0021	891	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC6_chr10_59783747_59911556	1/0	c0001	1425	92	35	9	35	4	8	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0002	1425	59	2	21	28	1	7	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0003	1425	45	15	10	7	4	9	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/1	c0004	1425	40	14	6	11	4	4	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0005	1425	20	18	2	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0006	1425	18	0	0	17	0	1	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0007	1425	6	1	1	4	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0008	1425	3	0	3	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0009	1425	1	0	0	0	0	1	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	c0013	1425	1	0	0	0	1	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC70_chr13_51856969_51871232	1/0	c0001	669	213	50	34	92	10	26	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/1	c0002	669	182	27	38	94	8	14	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0003	669	23	13	5	2	0	3	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0004	669	6	5	1	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0005	669	2	0	0	1	0	1	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0006	669	2	0	0	2	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0007	669	1	0	0	1	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	c0008	669	1	1	0	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC71L_chr7_106649360_106666158	1/1	c0001	708	433	91	86	194	18	42	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	c0002	708	2	2	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	c0003	708	2	2	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	c0004	708	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	c0005	708	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	c0006	708	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71_chr3_49157535_49171331	0/0	c0001	1404	146	39	30	48	4	25	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	1/1	c0002	1404	78	31	16	15	8	6	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	c0003	1404	14	14	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	c0004	1404	1	1	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	c0005	1404	1	1	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	c0006	1404	1	0	0	0	0	1	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	c0007	1404	1	0	0	1	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC73_chr11_32597721_32799662	0/1	c0001	3240	133	51	30	23	8	20	copy fasta	CCDC73	chr11	32597721	32799662