JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD3E_chr11_118299730_118321173	0/0	c0007	624	2	2	0	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0008	624	1	0	0	1	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0009	624	1	1	0	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3G_chr11_118339344_118360161	1/1	c0001	549	297	82	71	104	15	23	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0002	549	138	10	8	93	1	26	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0003	549	2	2	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0004	549	2	0	2	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0005	549	1	0	1	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0006	549	1	0	0	0	0	1	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	c0007	549	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD40LG_chrX_136643158_136665390	1/1	c0001	786	215	61	29	93	12	18	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0002	786	63	12	24	16	0	11	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0003	786	2	0	0	1	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0004	786	2	0	0	2	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0005	786	2	2	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0006	786	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0007	786	1	0	0	0	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	c0008	785	1	0	0	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40_chr20_46113314_46134858	1/1	c0001	834	389	77	62	184	18	46	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0002	834	10	1	9	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0003	834	10	10	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0004	834	3	0	0	3	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0005	834	2	1	1	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0006	834	1	0	0	1	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	c0007	834	1	1	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD44_chr11_35134171_35237402	0/1	c0001	2229	254	38	32	149	7	27	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0002	2229	25	24	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0003	2229	22	6	9	4	1	2	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0004	2229	21	5	6	8	0	2	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0005	2229	15	1	8	5	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	1/0	c0006	2229	8	0	6	0	1	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0007	2229	8	7	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0008	2229	4	4	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0009	2229	4	4	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0010	2229	4	0	4	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0011	2229	2	0	0	2	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0012	2229	2	0	2	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0013	2229	2	0	1	0	1	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0014	2229	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0015	2229	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0016	2229	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0017	2229	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0018	2229	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0019	2229	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	c0020	2248	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD46_chr1_207747054_207800504	1/1	c0001	1134	364	86	75	148	15	38	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0002	1134	6	0	1	5	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0003	1134	2	2	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0004	1134	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504