JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDX2_chr13_27955918_27974315	0/1	c0001	942	287	46	57	136	16	31	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	1/0	c0002	942	81	22	17	33	2	6	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	c0003	942	25	24	1	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	c0004	942	24	0	1	23	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	c0005	942	1	0	0	0	0	1	copy fasta	CDX2	chr13	27955918	27974315
CDX4_chrX_73442053_73460171	1/1	c0001	855	287	81	49	114	11	30	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	c0002	855	1	1	0	0	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	c0003	855	1	0	0	1	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDY1B_chrY_24040793_24053019	0/0	c0001	1623	49	0	13	25	3	8	copy fasta	CDY1B	chrY	24040793	24053019
CDY1B_chrY_24040793_24053019	0/0	c0002	1623	1	0	1	0	0	0	copy fasta	CDY1B	chrY	24040793	24053019
CDY1B_chrY_24040793_24053019	0/0	c0003	1623	1	0	1	0	0	0	copy fasta	CDY1B	chrY	24040793	24053019
CDY1_chrY_25617117_25629902	0/0	c0001	1665	81	11	12	46	3	9	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	c0002	1665	8	0	5	0	1	2	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	c0003	1665	1	0	0	0	1	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	c0004	1648	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	c0005	1663	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY2A_chrY_18020787_18032746	0/0	c0001	1626	63	9	15	22	3	14	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	c0002	1626	2	0	1	0	1	0	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	c0003	1626	1	0	1	0	0	0	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	c0004	1626	1	0	0	0	0	1	copy fasta	CDY2A	chrY	18020787	18032746
CDY2B_chrY_17873260_17885220	0/0	c0001	1626	52	5	18	12	3	14	copy fasta	CDY2B	chrY	17873260	17885220
CDY2B_chrY_17873260_17885220	0/0	c0002	1626	1	0	0	0	0	1	copy fasta	CDY2B	chrY	17873260	17885220
CDYL2_chr16_80592907_80809598	1/1	c0001	1521	108	15	26	52	3	10	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0002	1521	86	19	21	26	5	15	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0003	1521	21	17	3	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0004	1521	13	11	0	2	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0005	1521	9	9	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0006	1521	2	0	0	2	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0007	1521	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0008	1521	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0009	1521	2	1	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0010	1521	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0011	1521	2	0	1	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0012	1521	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0013	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0014	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0015	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0016	1521	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0017	1521	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0018	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0019	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	c0020	1521	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL_chr6_4771404_4960544	1/1	c0001	1635	202	40	40	76	8	36	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0002	1635	20	19	1	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0003	1635	11	11	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0004	1635	7	7	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0005	1635	2	2	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0006	1635	2	2	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0007	1635	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0008	1635	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544