JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEMIP2_chr9_71678366_71773513	0/0	c0002	4152	33	1	10	16	2	4	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0003	4152	25	0	9	10	2	4	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0004	4152	19	0	6	5	1	7	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0005	4152	19	3	7	8	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0006	4152	13	4	0	9	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0007	4152	9	9	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0008	4152	9	8	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0009	4152	9	2	4	0	0	3	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0010	4152	7	3	1	3	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0011	4152	6	0	0	6	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0012	4152	6	0	2	4	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0013	4152	5	4	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0014	4152	3	2	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0015	4152	3	2	0	0	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0016	4152	3	1	0	1	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0017	4152	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0018	4152	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0019	4152	2	0	1	0	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0020	4152	2	0	0	2	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0021	4152	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0022	4152	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0023	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0024	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0025	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0026	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0027	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0028	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0029	4152	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0030	4152	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0031	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0032	4152	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0033	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0034	4152	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0035	4152	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0036	4152	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0037	4152	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0038	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	c0039	4152	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP_chr15_80774370_80956771	0/1	c0001	4086	147	32	29	58	5	22	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0002	4086	30	10	7	7	2	4	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0003	4086	14	14	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0004	4086	7	0	0	7	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0005	4086	5	3	2	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0006	4086	5	5	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0007	4086	4	3	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0008	4086	3	3	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0009	4083	3	0	2	0	0	1	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0010	4086	3	2	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0011	4086	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0012	4086	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771