JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHAC1_chr15_40948471_40961512	0/0	c0003	669	3	0	2	0	1	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0004	669	2	0	1	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0005	669	1	0	0	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0006	669	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0007	669	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0008	669	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0009	669	1	0	0	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC2_chr2_53762804_53780196	1/1	c0001	555	423	93	64	204	16	44	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	c0002	555	3	3	0	0	0	0	copy fasta	CHAC2	chr2	53762804	53780196
CHADL_chr22_41224513_41245931	1/1	c0001	2289	370	71	63	170	17	47	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0002	2289	12	0	7	5	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0003	2289	12	12	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0004	2289	5	4	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0005	2289	3	3	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0006	2289	2	2	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0007	2289	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0008	2289	1	1	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0009	2289	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0010	2289	1	0	0	0	0	1	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0011	2289	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0012	2289	1	0	0	0	1	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0013	2289	1	1	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0014	2289	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0015	2289	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	c0016	2289	1	0	0	1	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHAD_chr17_50459496_50473880	1/0	c0001	1080	273	65	41	124	12	30	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/1	c0002	1080	83	7	26	35	4	10	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0003	1080	6	3	3	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0004	1080	5	5	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0005	1080	5	4	1	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0006	1080	3	0	3	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0007	1080	2	2	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0008	1080	2	0	2	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0009	1080	2	0	0	0	0	2	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0010	1080	2	0	0	2	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0011	1080	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0012	1080	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	c0013	1080	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAF1A_chr19_4397640_4448397	0/1	c0001	2871	171	36	23	95	4	12	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	1/0	c0002	2871	110	17	18	49	7	18	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0003	2871	46	5	27	2	5	7	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0004	2871	12	12	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0005	2871	11	2	0	7	0	2	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0006	2871	6	6	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0007	2871	4	4	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0008	2871	3	0	0	0	0	3	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0009	2871	2	0	2	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0010	2871	2	1	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0011	2871	2	2	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0012	2871	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397