JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHCHD3_chr7_132779870_133087090	0/0	c0004	684	1	0	1	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD4_chr3_14107077_14129870	1/1	c0001	429	415	96	72	188	14	43	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	c0002	429	1	0	0	0	0	1	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD5_chr2_112579609_112594040	1/1	c0001	333	437	96	76	208	16	39	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	c0002	333	2	2	0	0	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	c0003	333	2	0	0	2	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	c0004	333	1	0	0	1	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	c0005	333	1	0	0	0	0	1	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	c0006	333	1	0	0	1	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD6_chr3_126699240_126965420	1/1	c0001	708	125	47	37	20	4	15	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0002	708	81	17	12	39	2	11	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0003	708	4	4	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0004	708	2	2	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0005	708	1	0	1	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0006	708	1	0	0	1	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0007	708	1	1	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	c0008	708	1	1	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD7_chr8_56206789_56223809	1/1	c0001	258	383	92	70	166	13	40	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	c0002	258	1	0	0	0	1	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCT1_chr17_60417489_60436426	1/1	c0001	711	191	14	61	92	4	18	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0002	711	50	7	4	37	0	2	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0003	711	37	34	3	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0004	711	17	17	0	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0005	711	14	14	0	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0006	711	11	9	2	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0007	711	1	0	0	1	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	c0008	711	1	1	0	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHD1L_chr1_147237684_147300762	1/0	c0001	2694	171	37	42	73	5	13	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0002	2694	61	2	9	36	6	8	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/1	c0003	2694	55	2	14	21	2	15	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0004	2694	54	14	2	36	1	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0005	2694	17	13	1	1	0	2	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0006	2694	10	0	0	10	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0007	2694	8	8	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0008	2694	8	8	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0009	2694	5	3	0	2	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0010	2694	4	0	0	4	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0011	2694	4	4	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0012	2694	3	0	2	0	0	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0013	2694	2	0	0	2	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0014	2694	2	0	2	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0015	2694	2	0	2	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0016	2694	1	1	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0017	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0018	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0019	2694	1	0	0	0	0	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0020	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0021	2694	1	1	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0022	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0023	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762