JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD3G_chr11_118339344_118360161	0/0	g0080	1	0	0	0	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0081	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0082	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0083	1	0	0	0	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0084	1	0	0	0	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0085	1	0	0	0	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0086	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0087	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0088	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0089	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0090	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0091	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0092	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0093	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0094	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0095	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0096	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0097	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0098	1	0	0	0	1	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0099	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0100	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0101	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0102	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0103	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0104	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0105	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0106	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0107	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0108	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0109	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0110	1	0	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0111	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0112	1	0	0	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0113	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0114	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0115	1	1	0	0	0	0	CD3G	chr11	118339344	118360161
CD40LG_chrX_136643158_136665390	1/1	g0001	125	12	22	64	9	16	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0002	23	8	7	6	0	2	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0003	21	21	0	0	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0004	12	0	0	12	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0005	11	0	2	8	0	1	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0006	10	0	9	0	0	1	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0007	5	0	2	0	3	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0008	5	5	0	0	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0009	4	0	0	4	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0010	4	2	1	0	1	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0011	3	0	0	0	0	3	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0012	3	0	0	3	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0013	3	3	0	0	0	0	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	g0014	2	2	0	0	0	0	CD40LG	chrX	136643158	136665390