JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDX4_chrX_73442053_73460171	0/0	g0008	3	3	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0009	3	0	1	0	2	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0010	3	3	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0011	2	1	1	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0012	2	0	0	2	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0013	2	0	2	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0014	2	2	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0015	2	0	2	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0016	2	0	0	2	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0017	2	2	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0018	2	0	0	2	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0019	1	1	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0020	1	1	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0021	1	0	0	0	0	1	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0022	1	0	1	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0023	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0024	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0025	1	0	0	0	0	1	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0026	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0027	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0028	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0029	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0030	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0031	1	0	0	0	0	1	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0032	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0033	1	0	1	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	1/0	g0034	1	0	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0035	1	1	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0036	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0037	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0038	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0039	1	1	0	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0040	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0041	1	0	1	0	0	0	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	g0042	1	0	0	1	0	0	CDX4	chrX	73442053	73460171
CDY1B_chrY_24040793_24053019	0/0	g0000	51	0	15	25	3	8	CDY1B	chrY	24040793	24053019
CDY1_chrY_25617117_25629902	0/0	g0001	90	11	17	46	5	11	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	g0002	1	0	0	1	0	0	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	g0003	1	0	0	1	0	0	CDY1	chrY	25617117	25629902
CDY2A_chrY_18020787_18032746	0/0	g0000	67	9	17	22	4	15	CDY2A	chrY	18020787	18032746
CDY2B_chrY_17873260_17885220	0/0	g0000	53	5	18	12	3	15	CDY2B	chrY	17873260	17885220
CDYL2_chr16_80592907_80809598	0/0	g0001	2	2	0	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0002	1	0	0	1	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0003	1	1	0	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0004	1	1	0	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0005	1	1	0	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0006	1	0	0	0	0	1	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0007	1	0	1	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0008	1	0	1	0	0	0	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	g0009	1	0	1	0	0	0	CDYL2	chr16	80592907	80809598