JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
CEP68_chr2_65051416_65092004	0/0	g0237	1	0	1	0	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0238	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0239	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0240	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0241	1	0	1	0	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0242	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0243	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0244	1	0	1	0	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	1/0	g0245	1	0	0	0	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0246	1	0	0	1	0	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	g0247	1	1	0	0	0	CEP68	chr2	65051416	65092004
CEP70_chr3_138489344_138599260	0/0	g0001	6	0	0	6	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0002	4	0	0	4	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0003	3	3	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0004	3	0	3	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0005	3	3	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0006	3	0	0	0	3	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0007	3	0	0	3	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0008	2	0	2	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0009	2	0	0	0	2	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0010	2	1	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0011	2	0	1	0	1	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0012	2	2	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0013	2	0	0	2	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0014	2	0	2	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0015	2	0	0	2	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0016	2	0	1	1	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0017	2	2	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0018	2	2	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0019	2	2	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0020	2	0	0	0	2	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0021	2	0	0	2	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/1	g0022	2	0	0	0	1	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0023	1	0	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0024	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0025	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0026	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0027	1	0	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0028	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0029	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0030	1	0	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0031	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0032	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0033	1	0	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0034	1	0	0	1	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0035	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0036	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0037	1	1	0	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0038	1	0	1	0	0	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	g0039	1	0	1	0	0	CEP70	chr3	138489344	138599260