JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEP76_chr18_12667625_12707723	0/0	g0266	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0267	1	0	0	0	0	1	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0268	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0269	1	1	0	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0270	1	0	1	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0271	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0272	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0273	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0274	1	0	1	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0275	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0276	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0277	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0278	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0279	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0280	1	0	0	0	0	1	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0281	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0282	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0283	1	0	1	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0284	1	0	1	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0285	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0286	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0287	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0288	1	0	1	0	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0289	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	g0290	1	0	0	1	0	0	CEP76	chr18	12667625	12707723
CEP78_chr9_78231075_78284690	0/0	g0001	13	0	2	8	1	2	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0002	10	0	2	7	0	1	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0003	9	0	4	0	4	1	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0004	8	0	0	8	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0005	6	6	0	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0006	5	0	5	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0007	5	0	3	0	1	1	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0008	4	4	0	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0009	4	4	0	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0010	3	0	2	0	1	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0011	3	1	0	1	0	1	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0012	3	3	0	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0013	3	0	0	3	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0014	3	0	0	3	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0015	3	0	0	3	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0016	3	0	0	3	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0017	3	0	3	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0018	3	0	0	2	0	1	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0019	2	0	0	2	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0020	2	0	2	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0021	2	0	0	2	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0022	2	0	0	2	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0023	2	2	0	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0024	2	1	1	0	0	0	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	g0025	2	0	0	2	0	0	CEP78	chr9	78231075	78284690