JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHAD_chr17_50459496_50473880	0/0	g0052	1	0	0	0	0	1	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0053	1	0	1	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0054	1	0	0	0	0	1	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0055	1	0	0	0	0	1	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0056	1	0	0	1	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0057	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0058	1	0	0	0	1	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0059	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0060	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0061	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0062	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0063	1	0	0	0	0	1	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0064	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0065	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0066	1	0	1	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0067	1	1	0	0	0	0	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	g0068	1	0	0	1	0	0	CHAD	chr17	50459496	50473880
CHAF1A_chr19_4397640_4448397	0/0	g0001	3	0	0	3	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0002	3	0	1	1	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0003	2	0	0	2	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0004	2	0	0	2	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0005	2	0	1	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0006	2	0	0	2	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0007	2	0	0	2	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0008	2	0	1	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0009	2	0	0	2	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0010	2	2	0	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0011	2	0	2	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0012	2	0	1	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0013	2	0	2	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	1/0	g0014	2	0	0	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0015	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0016	1	0	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0017	1	0	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0018	1	0	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0019	1	0	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0020	1	0	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0021	1	0	0	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0022	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0023	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0024	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0025	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0026	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0027	1	0	0	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0028	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0029	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0030	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0031	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0032	1	0	0	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0033	1	0	0	1	0	0	CHAF1A	chr19	4397640	4448397