JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCA4_chr1_93987834_94126148	0/0	g0277	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0278	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0279	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0280	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0281	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0282	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0283	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0284	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0285	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0286	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0287	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0288	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0289	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0290	1	0	0	0	0	1	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0291	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0292	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0293	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0294	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0295	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0296	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0297	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0298	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0299	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0300	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0301	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0302	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	0/0	g0001	2	0	2	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0002	2	0	2	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0003	2	2	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0004	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0005	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0006	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0007	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0008	1	0	0	1	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0009	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0010	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0011	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0012	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0013	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0014	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0015	1	0	0	0	1	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0016	1	0	0	0	1	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0017	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0018	1	0	0	0	0	1	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0019	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0020	1	0	0	0	0	1	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0021	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0022	1	0	0	1	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0023	1	0	0	1	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0024	1	0	0	1	0	0	ABCA5	chr17	69239311	69332133