JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCA5_chr17_69239311_69332133	0/0	g0325	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0326	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0327	1	0	0	0	0	1	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0328	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0329	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0330	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0331	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0332	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0333	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0334	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0335	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0336	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0337	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0338	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0339	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0340	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0341	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0342	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0343	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0344	1	0	1	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0345	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0346	1	1	0	0	0	0	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	g0347	1	0	0	0	1	0	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	0/0	g0001	4	1	3	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0002	4	0	0	3	0	1	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0003	4	2	1	0	0	1	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0004	3	0	0	3	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0005	3	0	0	3	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0006	3	0	3	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0007	3	0	0	3	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0008	3	3	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0009	3	0	0	3	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0010	3	2	1	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0011	3	3	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0012	2	0	0	0	2	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0013	2	1	1	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0014	2	0	1	0	1	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0015	2	0	0	1	0	1	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0016	2	0	0	1	0	1	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0017	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0018	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0019	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0020	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0021	2	0	2	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0022	2	2	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0023	2	2	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0024	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0025	2	0	0	2	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0026	2	0	1	0	0	1	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0027	2	0	0	0	0	2	ABCA6	chr17	69073702	69146895