JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGL_chr1_99845361_99929020	0/0	g0282	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0283	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0284	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0285	1	1	0	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0286	1	1	0	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0287	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0288	1	0	0	0	1	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0289	1	1	0	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0290	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0291	1	1	0	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0292	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0293	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0294	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0295	1	0	1	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0296	1	1	0	0	0	0	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	g0297	1	0	0	1	0	0	AGL	chr1	99845361	99929020
AGMAT_chr1_15566699_15590051	0/0	g0001	11	0	3	6	0	2	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0002	9	0	0	9	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0003	7	0	1	5	1	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0004	7	1	1	4	0	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0005	5	1	1	1	1	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0006	5	0	2	0	1	2	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	1/0	g0007	5	0	3	0	1	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0008	4	0	0	4	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0009	4	0	2	0	1	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0010	4	0	0	4	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0011	4	0	1	0	1	2	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0012	4	0	0	4	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0013	3	1	2	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0014	3	3	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0015	3	2	1	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0016	3	3	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0017	3	3	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0018	3	3	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0019	3	0	2	1	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0020	3	0	0	2	0	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0021	3	0	3	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0022	3	0	1	0	0	2	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0023	3	0	0	1	1	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0024	3	0	0	3	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0025	3	0	0	3	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0026	2	0	0	0	1	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0027	2	2	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0028	2	2	0	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0029	2	0	0	2	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0030	2	1	0	0	0	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0031	2	0	1	0	0	1	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0032	2	0	0	0	2	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0033	2	0	2	0	0	0	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	g0034	2	0	0	0	0	2	AGMAT	chr1	15566699	15590051