JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMT_chr3_49411778_49427473	0/0	g0005	16	0	2	10	2	2	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0006	11	10	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0007	11	9	2	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0008	7	0	7	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0009	7	7	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0010	5	0	1	2	2	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0011	4	2	1	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0012	4	4	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0013	3	0	3	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0014	2	0	0	0	2	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0015	2	1	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0016	2	2	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0017	2	0	0	2	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0018	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0019	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0020	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0021	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0022	1	0	0	0	0	1	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0023	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0024	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0025	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0026	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0027	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0028	1	0	0	0	0	1	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0029	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0030	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0031	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0032	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0033	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0034	1	0	0	0	0	1	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0035	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0036	1	0	1	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0037	1	0	0	0	0	1	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0038	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0039	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0040	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0041	1	1	0	0	0	0	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0042	1	0	0	1	0	0	AMT	chr3	49411778	49427473
AMY1A_chr1_103650760_103669554	0/0	g0001	19	1	5	6	3	4	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0002	16	0	0	11	0	5	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0003	15	1	1	4	0	9	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0004	12	1	3	8	0	0	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0005	9	0	3	1	1	4	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0006	9	0	0	9	0	0	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0007	8	1	1	6	0	0	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0008	7	1	0	5	0	1	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0009	7	1	1	4	0	1	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0010	6	0	0	6	0	0	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0011	5	5	0	0	0	0	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	g0012	4	0	0	4	0	0	AMY1A	chr1	103650760	103669554