JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APEX2_chrX_54995363_55014057	0/0	g0006	4	3	1	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0007	2	2	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0008	2	2	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0009	2	0	0	2	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0010	2	2	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0011	2	0	1	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0012	2	2	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0013	2	0	1	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0014	1	0	1	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0015	1	1	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0016	1	0	0	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0017	1	1	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0018	1	1	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0019	1	0	1	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0020	1	0	0	1	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0021	1	0	0	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0022	1	0	0	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0023	1	0	0	1	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0024	1	0	1	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0025	1	0	1	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0026	1	1	0	0	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0027	1	0	0	0	0	1	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0028	1	0	0	1	0	0	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	g0029	1	0	0	1	0	0	APEX2	chrX	54995363	55014057
APH1A_chr1_150260404_150274016	1/0	g0001	269	74	49	102	11	32	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0002	95	0	7	73	4	11	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0003	30	0	8	22	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/1	g0004	9	0	7	0	0	1	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0005	8	8	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0006	5	5	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0007	3	3	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0008	2	0	0	2	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0009	2	1	1	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0010	2	0	2	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0011	1	0	0	1	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0012	1	0	0	1	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0013	1	0	1	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0014	1	1	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0015	1	1	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0016	1	1	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0017	1	0	0	1	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0018	1	0	0	1	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0019	1	1	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0020	1	1	0	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0021	1	0	0	0	0	1	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0022	1	0	0	1	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0023	1	0	0	0	0	1	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0024	1	0	1	0	0	0	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	g0025	1	0	0	0	1	0	APH1A	chr1	150260404	150274016
APH1B_chr15_63272605_63314126	0/0	g0001	24	0	3	21	0	0	APH1B	chr15	63272605	63314126