JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AQR_chr15_34846782_34974742	0/0	g0294	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0295	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0296	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0297	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0298	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0299	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0300	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0301	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0302	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	1/0	g0303	1	0	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0304	1	0	0	0	0	1	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0305	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0306	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0307	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0308	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0309	1	1	0	0	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0310	1	0	0	1	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0311	1	0	0	1	0	0	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	g0312	1	1	0	0	0	0	AQR	chr15	34846782	34974742
ARAF_chrX_47556205_47576908	1/0	g0001	39	0	5	26	2	5	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0002	27	0	3	21	2	1	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0003	23	0	7	13	1	2	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0004	16	13	3	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0005	16	0	0	14	0	2	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0006	10	0	1	2	4	3	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0007	10	0	3	5	0	2	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0008	9	7	2	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0009	7	7	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0010	7	7	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0011	6	0	2	4	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0012	6	0	0	6	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0013	6	0	4	2	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0014	4	0	0	4	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0015	4	1	1	0	1	1	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0016	3	3	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0017	3	0	0	3	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0018	3	0	0	3	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0019	2	2	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0020	2	2	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0021	2	0	0	0	0	2	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0022	2	0	0	2	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0023	2	0	1	1	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0024	2	0	1	0	1	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0025	2	0	0	2	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0026	2	0	0	1	0	1	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0027	2	0	2	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0028	2	0	0	2	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0029	2	2	0	0	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0030	2	0	0	2	0	0	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	g0031	2	0	0	2	0	0	ARAF	chrX	47556205	47576908