JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B3GALT5_chr21_39607940_39678137	0/0	g0298	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0299	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0300	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0301	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0302	1	0	0	0	1	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0303	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0304	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0305	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0306	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0307	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0308	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0309	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0310	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0311	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0312	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0313	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0314	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0315	1	1	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0316	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0317	1	0	0	1	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0318	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0319	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0320	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0321	1	0	1	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0322	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0323	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0324	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0325	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0326	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/1	g0327	1	0	0	0	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0328	1	0	0	1	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0329	1	0	0	0	0	1	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0330	1	0	0	1	0	0	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	g0331	1	0	0	1	0	0	B3GALT5	chr21	39607940	39678137
B3GALT6_chr1_1227237_1240041	1/1	g0000	366	96	66	150	14	38	B3GALT6	chr1	1227237	1240041
B3GALT9_chr9_120788467_120806787	0/0	g0001	122	1	34	75	5	7	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0002	81	17	4	52	3	5	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0003	22	5	8	9	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/1	g0004	19	6	0	10	0	2	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0005	15	7	2	5	0	1	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0006	12	2	2	8	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0007	10	4	3	1	0	2	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0008	10	7	0	3	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0009	8	0	1	3	2	2	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0010	6	3	1	0	1	1	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0011	6	0	5	0	1	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0012	5	0	0	5	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0013	5	3	2	0	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0014	4	0	0	4	0	0	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	g0015	4	0	0	4	0	0	B3GALT9	chr9	120788467	120806787