JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USF2_chr19_35263962_35284821	0/0	g0101	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0102	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0103	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0104	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0105	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0106	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0107	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0108	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0109	1	0	0	0	0	1	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0110	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0111	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0112	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0113	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0114	1	0	1	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0115	1	0	0	0	0	1	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0116	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0117	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0118	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0119	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0120	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0121	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0122	1	1	0	0	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0123	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0124	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	g0125	1	0	0	1	0	0	USF2	chr19	35263962	35284821
USF3_chr3_113643385_113701642	0/0	g0001	7	0	0	6	1	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0002	5	4	1	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0003	5	0	2	3	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0004	3	3	0	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0005	3	0	0	0	3	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0006	3	0	0	3	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0007	2	0	1	0	1	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0008	2	2	0	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0009	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0010	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0011	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0012	2	2	0	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0013	2	0	2	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0014	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0015	2	0	2	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0016	2	2	0	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0017	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0018	2	0	2	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0019	2	0	2	0	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0020	2	0	1	1	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0021	2	0	1	0	0	1	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0022	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0023	2	0	0	0	0	2	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0024	2	0	0	2	0	0	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	g0025	2	0	0	2	0	0	USF3	chr3	113643385	113701642