JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USP51_chrX_55479616_55494848	0/0	g0001	100	1	15	66	4	14	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0002	58	5	14	33	1	5	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/1	g0003	47	36	6	0	0	4	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0004	19	1	10	4	3	1	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0005	7	7	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0006	6	0	2	3	0	1	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	1/0	g0007	6	5	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0008	6	5	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0009	5	4	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0010	5	2	2	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0011	4	3	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0012	3	0	1	1	1	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0013	2	0	0	2	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0014	1	0	0	0	0	1	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0015	1	0	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0016	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0017	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0018	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0019	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0020	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0021	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0022	1	0	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0023	1	0	0	0	0	1	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0024	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0025	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0026	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0027	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0028	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0029	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0030	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0031	1	0	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0032	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0033	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0034	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0035	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0036	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0037	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0038	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0039	1	0	0	1	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0040	1	0	1	0	0	0	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	g0041	1	1	0	0	0	0	USP51	chrX	55479616	55494848
USP53_chr4_119207713_119300518	0/0	g0001	22	0	7	14	0	1	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0002	3	3	0	0	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0003	3	3	0	0	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0004	3	0	2	0	1	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0005	3	0	0	3	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0006	3	0	0	3	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0007	2	0	0	2	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0008	2	0	0	2	0	0	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	g0009	2	0	0	2	0	0	USP53	chr4	119207713	119300518