JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VANGL1_chr1_115636970_115703221	0/0	g0354	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0355	1	0	0	0	1	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0356	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0357	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0358	1	0	0	0	0	1	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0359	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0360	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0361	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0362	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0363	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0364	1	0	0	0	0	1	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0365	1	0	0	0	0	1	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0366	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0367	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0368	1	0	0	0	1	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0369	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0370	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0371	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0372	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0373	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0374	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0375	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/1	g0376	1	0	0	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0377	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0378	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0379	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0380	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0381	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0382	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0383	1	0	0	0	0	1	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0384	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0385	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0386	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0387	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0388	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	1/0	g0389	1	0	0	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0390	1	0	1	0	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0391	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0392	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0393	1	0	0	1	0	0	VANGL1	chr1	115636970	115703221
VANGL2_chr1_160395564_160433670	0/0	g0001	42	2	12	16	4	8	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0002	24	0	2	18	0	4	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0003	22	0	4	12	1	5	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0004	19	1	7	3	3	5	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0005	15	0	1	14	0	0	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0006	8	0	2	2	0	4	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0007	7	0	0	7	0	0	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0008	7	0	0	7	0	0	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	g0009	6	6	0	0	0	0	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	1/0	g0010	6	0	1	4	0	0	VANGL2	chr1	160395564	160433670