JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VWCE_chr11_61253286_61300316	0/0	g0143	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0144	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0145	1	0	0	0	0	1	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0146	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0147	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0148	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0149	1	0	0	0	0	1	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0150	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0151	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0152	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0153	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0154	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0155	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0156	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0157	1	0	0	0	0	1	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0158	1	0	0	1	0	0	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	g0159	1	1	0	0	0	0	VWCE	chr11	61253286	61300316
VWDE_chr7_12325885_12408865	0/0	g0001	8	0	2	3	0	3	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0002	7	0	0	7	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0003	6	0	0	6	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0004	5	0	1	4	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0005	5	1	1	0	2	1	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0006	4	0	4	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0007	4	0	1	0	1	2	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0008	4	0	0	4	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0009	4	4	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0010	3	0	1	0	2	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0011	3	3	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0012	3	0	3	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0013	2	2	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0014	2	2	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0015	2	0	2	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0016	2	2	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0017	2	2	0	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0018	2	0	2	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0019	2	0	0	0	2	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0020	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0021	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0022	2	0	0	0	0	2	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0023	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0024	2	0	2	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0025	2	0	0	0	0	2	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0026	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0027	2	0	2	0	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0028	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0029	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0030	2	0	1	0	0	1	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0031	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0032	2	0	0	2	0	0	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	g0033	2	0	0	2	0	0	VWDE	chr7	12325885	12408865