JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XAGE1B_chrX_52507077_52522063	0/0	g0003	13	0	0	13	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0004	6	0	0	5	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0005	5	5	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0006	5	1	1	3	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0007	3	0	3	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0008	3	3	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0009	3	0	2	0	1	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0010	2	0	0	0	2	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0011	2	0	2	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0012	2	2	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0013	2	2	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0014	2	2	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0015	2	0	1	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0016	2	0	1	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0017	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0018	1	0	0	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0019	1	0	1	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0020	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0021	1	0	1	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0022	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0023	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0024	1	0	0	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0025	1	0	0	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0026	1	0	0	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0027	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0028	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0029	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0030	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0031	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0032	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0033	1	1	0	0	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0034	1	0	0	0	0	1	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0035	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0036	1	0	0	1	0	0	XAGE1B	chrX	52507077	52522063
XAGE2_chrX_52364021_52380680	1/1	g0001	182	37	37	82	6	18	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0002	19	17	2	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0003	10	5	4	0	0	1	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0004	7	6	1	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0005	4	4	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0006	3	0	1	0	0	2	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0007	2	0	0	2	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0008	2	0	0	0	0	2	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0009	2	2	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0010	1	0	0	0	1	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0011	1	1	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0012	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0013	1	1	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0014	1	0	0	0	0	1	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0015	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0016	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680