JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XAGE5_chrX_52806287_52823301	0/0	g0009	2	0	0	2	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0010	2	2	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0011	2	0	0	2	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0012	2	2	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0013	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0014	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0015	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	1/0	g0016	1	0	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0017	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0018	1	1	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0019	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0020	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0021	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0022	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0023	1	0	0	0	1	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0024	1	0	0	0	0	1	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0025	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0026	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0027	1	0	1	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0028	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0029	1	1	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0030	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0031	1	1	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0032	1	1	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0033	1	1	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0034	1	0	0	1	0	0	XAGE5	chrX	52806287	52823301
XBP1_chr22_28789560_28805569	1/0	g0001	99	12	27	45	7	7	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0002	68	16	3	46	0	3	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/1	g0003	43	0	2	25	5	10	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0004	15	0	1	7	2	5	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0005	14	13	1	0	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0006	12	1	0	11	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0007	8	8	0	0	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0008	7	1	0	6	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0009	6	1	4	0	0	1	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0010	6	3	1	2	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0011	5	0	0	5	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0012	5	2	2	0	0	1	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0013	5	0	0	0	0	5	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0014	5	0	3	0	0	2	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0015	5	0	0	5	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0016	5	0	0	5	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0017	4	0	0	4	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0018	4	0	4	0	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0019	3	0	0	3	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0020	3	0	0	3	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0021	3	3	0	0	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0022	3	3	0	0	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0023	3	0	0	3	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0024	3	3	0	0	0	0	XBP1	chr22	28789560	28805569