JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF699_chr19_9286140_9314838	0/0	g0198	1	0	0	0	0	1	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0199	1	0	0	1	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0200	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0201	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0202	1	0	0	1	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0203	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0204	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0205	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0206	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0207	1	1	0	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0208	1	1	0	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0209	1	1	0	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0210	1	1	0	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0211	1	0	1	0	0	0	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	g0212	1	0	0	1	0	0	ZNF699	chr19	9286140	9314838
ZNF69_chr19_11882782_11911696	0/0	g0001	53	0	12	35	3	3	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	1/0	g0002	33	0	2	25	1	4	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0003	14	0	4	6	0	4	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0004	10	0	1	9	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0005	8	5	1	1	0	1	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0006	8	8	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0007	7	0	0	7	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0008	7	0	0	4	0	3	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0009	7	0	4	0	1	2	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0010	6	6	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0011	6	2	3	0	0	1	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0012	6	5	1	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0013	5	0	0	5	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0014	4	0	0	4	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0015	4	4	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0016	3	0	0	1	1	1	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0017	3	0	3	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0018	3	0	1	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0019	3	0	1	1	0	1	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0020	3	0	3	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0021	3	0	0	3	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0022	3	3	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0023	3	3	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0024	2	2	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0025	2	2	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0026	2	2	0	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0027	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0028	2	0	0	0	0	2	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0029	2	0	2	0	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0030	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0031	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0032	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0033	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0034	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	g0035	2	0	0	2	0	0	ZNF69	chr19	11882782	11911696