Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	genename	chr	start	end
ZZZ3_chr1_77557416_77687658	0/0	g0290	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0291	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0292	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0293	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0294	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0295	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0296	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0297	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0298	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0299	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0300	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0301	1	0	1	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0302	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0303	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0304	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0305	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0306	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0307	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0308	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0309	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0310	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0311	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0312	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0313	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0314	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0315	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0316	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0317	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0318	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0319	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0320	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0321	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0322	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0323	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0324	1	0	0	1	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0325	1	0	0	0	1	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0326	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0327	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0328	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0329	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0330	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0331	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0332	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0333	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0334	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0335	1	0	1	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0336	1	1	0	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0337	1	0	1	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0338	1	0	1	0	0	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	g0339	1	0	1	0	0	ZZZ3	chr1	77557416	77687658