JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBL_chr11_119201339_119313149	0/0	g0355	1	0	0	1	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0356	1	0	0	1	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0357	1	0	0	1	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0358	1	0	1	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0359	1	0	1	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0360	1	1	0	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0361	1	1	0	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0362	1	1	0	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0363	1	1	0	0	0	0	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	g0364	1	0	1	0	0	0	CBL	chr11	119201339	119313149
CBR1_chr21_36065024_36078164	0/0	g0001	122	24	34	51	2	11	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0002	59	1	7	42	0	9	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	1/0	g0003	57	0	2	48	0	6	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/1	g0004	56	11	14	20	6	4	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0005	39	22	8	0	1	8	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0006	16	11	2	0	0	3	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0007	10	0	0	10	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0008	8	6	2	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0009	6	0	0	6	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0010	5	3	1	0	1	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0011	5	0	1	4	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0012	5	0	1	4	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0013	4	0	1	0	2	1	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0014	4	0	1	3	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0015	3	3	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0016	3	0	0	3	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0017	3	3	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0018	2	0	0	2	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0019	2	0	0	0	1	1	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0020	2	0	1	0	1	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0021	2	0	0	0	0	2	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0022	2	0	0	0	2	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0023	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0024	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0025	1	0	0	0	0	1	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0026	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0027	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0028	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0029	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0030	1	0	0	1	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0031	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0032	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0033	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0034	1	1	0	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0035	1	0	1	0	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0036	1	0	0	1	0	0	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	g0037	1	0	0	1	0	0	CBR1	chr21	36065024	36078164
CBR3_chr21_36130079_36151562	0/0	g0001	10	0	1	6	2	1	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	g0002	9	0	1	6	1	1	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	g0003	9	0	3	6	0	0	CBR3	chr21	36130079	36151562