JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC70_chr13_51856969_51871232	0/0	g0037	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0038	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0039	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0040	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0041	1	0	1	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0042	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0043	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0044	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0045	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0046	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0047	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0048	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0049	1	0	0	0	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0050	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0051	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0052	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0053	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0054	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0055	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0056	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0057	1	0	1	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0058	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0059	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0060	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC71L_chr7_106649360_106666158	1/1	g0000	440	96	86	196	18	42	CCDC71L	chr7	106649360	106666158
CCDC71_chr3_49157535_49171331	0/0	g0001	142	39	29	45	4	25	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/1	g0002	53	27	13	7	3	2	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	1/0	g0003	22	2	3	7	5	4	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0004	6	6	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0005	3	3	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0006	2	2	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0007	2	2	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0008	2	0	0	2	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0009	1	0	1	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0010	1	1	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0011	1	0	0	0	0	1	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0012	1	0	0	1	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0013	1	1	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0014	1	0	0	1	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0015	1	0	0	1	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0016	1	1	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0017	1	1	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	g0018	1	1	0	0	0	0	CCDC71	chr3	49157535	49171331
CCDC73_chr11_32597721_32799662	0/0	g0001	1	0	0	1	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0002	1	0	0	1	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0003	1	1	0	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0004	1	1	0	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0005	1	1	0	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0006	1	1	0	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0007	1	1	0	0	0	0	CCDC73	chr11	32597721	32799662