JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBLN3_chr14_24421545_24434668	0/0	t0031	1859	1	0	1	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0032	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0033	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN4_chr20_55992357_56010519	1/1	t0001	2549	186	5	45	97	13	24	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0002	2549	102	4	10	75	3	10	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0003	2550	22	19	3	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0004	2549	17	0	3	12	0	2	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0005	2550	15	15	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0006	2550	15	14	1	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0007	2551	8	8	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0008	2549	6	0	0	6	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0009	2550	6	6	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0010	2550	5	1	1	3	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0011	2550	4	4	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0012	2548	4	4	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0013	2550	4	0	0	4	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0014	2550	3	3	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0015	2550	3	3	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0016	2549	2	2	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0017	2549	2	2	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0018	2549	2	0	0	2	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0019	2549	2	0	2	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0020	2550	2	1	1	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0021	2549	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0022	2549	1	0	0	1	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0023	2549	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0024	2550	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0025	2550	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0026	2551	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0027	2548	1	0	0	0	0	1	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0028	2549	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0029	2549	1	0	0	1	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0030	2549	1	0	0	1	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0031	2549	1	0	0	0	0	1	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0032	2549	1	0	0	1	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0033	2549	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0034	2550	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0035	2549	1	1	0	0	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	t0036	2549	1	0	0	1	0	0	copy fasta	CBLN4	chr20	55992357	56010519
CBL_chr11_119201339_119313149	0/0	t0001	8448	134	19	21	66	6	22	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0002	8453	86	14	17	50	2	3	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/1	t0003	8449	18	8	4	5	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0004	8453	8	0	0	8	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0005	8448	8	8	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0006	8446	7	6	1	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0007	8448	7	0	0	7	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0008	8448	5	5	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0009	8448	5	0	4	0	1	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0010	8448	5	5	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	t0011	8448	4	0	0	4	0	0	copy fasta	CBL	chr11	119201339	119313149