JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC127_chr5_191868_223153	0/0	t0201	8503	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0202	8384	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0203	8382	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0204	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0205	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0206	8383	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0207	8383	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0208	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0209	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0210	8387	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0211	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0212	8387	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0213	8383	1	0	0	0	1	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0214	8382	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0215	8383	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0216	8387	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0217	8387	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0218	8383	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0219	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0220	8383	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0221	8383	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0222	8387	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0223	8387	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0224	8387	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0225	8387	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0226	8386	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0227	8387	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0228	8387	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0229	8389	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0230	8390	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0231	8390	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC12_chr3_46916730_46981745	0/1	t0001	341	224	74	50	71	6	22	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	1/0	t0002	341	130	14	22	73	4	16	copy fasta	CCDC12	chr3	46916730	46981745
CCDC134_chr22_41795679_41837164	0/0	t0001	6443	64	1	9	39	3	12	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0002	6446	51	5	7	34	3	2	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0003	6443	38	1	20	7	1	9	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0004	6446	38	0	5	26	0	7	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0005	6444	10	10	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0006	6445	9	7	2	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0007	6445	8	0	0	8	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0008	6446	7	0	0	7	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0009	6446	7	0	2	0	2	3	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0010	6447	7	4	0	3	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0011	6446	7	0	3	4	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0012	6443	6	0	1	0	1	4	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0013	6444	6	6	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0014	6443	6	4	2	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0015	6443	5	0	0	5	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0016	6444	5	5	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0017	6447	5	5	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164