JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC71L_chr7_106649360_106666158	0/0	t0046	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0047	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0048	6092	1	0	0	0	0	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0049	6092	1	0	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0050	6091	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0051	6092	1	0	0	0	0	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0052	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0053	6092	1	0	0	0	0	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0054	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0055	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71_chr3_49157535_49171331	1/0	t0001	388	171	42	33	56	9	30	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/1	t0002	388	69	42	13	8	3	2	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	t0003	388	1	1	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	t0004	388	1	1	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC73_chr11_32597721_32799662	1/1	t0001	156	299	83	66	92	12	44	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	t0002	156	13	13	0	0	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC74A_chr2_131522888_131538666	1/1	t0001	352	227	73	43	60	12	37	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	t0002	352	203	15	32	139	4	13	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	t0003	352	6	0	5	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	t0004	352	3	3	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	t0005	352	1	1	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74B_chr2_130134287_130150112	0/1	t0001	385	319	95	60	124	13	26	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	1/0	t0002	385	127	2	21	76	5	22	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	t0003	385	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	t0004	385	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	t0005	385	1	0	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	t0006	385	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC77_chr12_396644_447642	0/1	t0001	834	202	41	50	65	8	37	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0002	834	109	12	12	75	4	6	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0003	834	47	0	5	38	0	4	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0004	834	34	17	8	9	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0005	834	11	11	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0006	834	9	0	1	8	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	1/0	t0007	834	5	1	1	2	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0008	834	3	3	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0009	834	2	2	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0010	834	2	0	1	0	0	1	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0011	818	2	2	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0012	818	2	2	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0013	834	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0014	834	1	1	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0015	834	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	t0016	834	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC78_chr16_717582_731443	1/1	t0001	173	341	69	72	142	12	44	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	t0002	173	27	25	2	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	t0003	173	11	0	0	10	0	1	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	t0004	173	9	1	2	3	0	3	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	t0005	183	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	t0006	173	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC7_chr10_32441140_32887864	1/1	t0001	669	301	79	44	131	11	34	copy fasta	CCDC7	chr10	32441140	32887864