JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD3G_chr11_118339344_118360161	0/0	t0020	2137	2	0	0	2	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0021	2140	2	1	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0022	2140	2	0	0	2	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0023	2141	2	0	1	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0024	2142	2	0	2	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0025	2136	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0026	2136	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0027	2124	1	0	0	0	0	1	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0028	2135	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0029	2135	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0030	2136	1	0	0	0	0	1	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0031	2136	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0032	2139	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0033	2138	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0034	2164	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0035	2142	1	1	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0036	2142	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0037	2142	1	0	1	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0038	2118	1	0	0	0	0	1	copy fasta	CD3G	chr11	118339344	118360161
CD40LG_chrX_136643158_136665390	0/0	t0001	1068	33	0	10	17	2	4	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	1/0	t0002	1067	22	0	5	13	2	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0003	1066	14	1	1	12	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0004	1069	13	1	0	8	1	3	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0005	1059	11	2	2	6	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0006	1067	10	2	4	4	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0007	1065	10	4	2	3	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0008	1066	9	0	1	5	1	2	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0009	1068	9	0	3	5	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0010	1058	8	1	2	5	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0011	1075	7	7	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0012	1069	6	0	0	5	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0013	1071	6	2	2	0	1	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0014	1070	5	0	1	2	1	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0015	1076	5	5	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0016	1073	5	4	1	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0017	1062	4	3	1	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0018	1072	3	0	0	2	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0019	1070	3	1	0	0	1	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0020	1064	3	0	1	2	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0021	1060	3	0	0	2	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0022	1069	3	0	1	1	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0023	1061	3	0	2	0	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0024	1064	3	2	0	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0025	1060	3	0	1	2	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0026	1059	3	1	2	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0027	1074	3	3	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0028	1074	2	0	0	2	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0029	1067	2	0	1	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0030	1061	2	0	0	2	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0031	1072	2	0	0	0	0	2	copy fasta	CD40LG	chrX	136643158	136665390