JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD40LG_chrX_136643158_136665390	0/0	t0082	1067	1	0	0	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0083	1073	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0084	1078	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0085	1072	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0086	1069	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0087	1079	1	0	0	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0088	1077	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0089	1074	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0090	1072	1	0	0	0	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0091	1069	1	1	0	0	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	t0092	1067	1	0	0	0	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40_chr20_46113314_46134858	0/1	t0001	849	279	78	54	105	10	31	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	1/0	t0002	849	121	1	15	82	7	15	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0003	849	9	9	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0004	849	3	0	2	0	1	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0005	849	1	0	0	1	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0006	849	1	0	1	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0007	849	1	1	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	t0008	849	1	1	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD44_chr11_35134171_35237402	0/1	t0001	3203	107	4	19	63	3	17	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0002	3204	69	12	17	36	1	3	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	1/0	t0003	3203	35	1	14	11	5	3	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0004	3204	33	0	8	20	0	5	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0005	3203	25	10	0	14	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0006	3203	23	17	0	6	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0007	3204	14	11	3	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0008	3204	10	5	1	4	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0009	3204	7	7	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0010	3204	6	1	3	0	1	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0011	3204	5	2	3	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0012	3203	4	4	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0013	3204	4	4	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0014	3204	3	1	1	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0015	18875	3	0	0	3	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0016	3203	3	0	0	3	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0017	3204	2	2	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0018	3203	2	0	0	2	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0019	3203	2	2	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0020	3203	2	0	0	2	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0021	3204	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0022	3204	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0023	3203	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0024	3203	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0025	3203	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0026	3203	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0027	3204	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0028	3204	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0029	3204	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0030	3203	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0031	3203	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402